@snowman910
Hey dude, I wrote the tutorial that you referred to, with the paper I use (Polaroid Photo Paper) there is a thin white film over the toner but not in the exposed areas, do you have exposed areas of the box showing through with no white film on, or does the whole thing have a white film?
If you have exposed areas and just white film on the toner parts then you don't need to do anything, just etch away as described in my tutorial. Whenever I do etches I never scrub or even expose the box to water after I've peeled the paper off as it's unnecessary, at least with the paper I mentioned.
Let me know how you get on man!