In all honesty I've not done any real digital board design in Eagle or the like. I seem to recall using PCB123 or somesuch but that was ages ago. I've designed quite a few stencil transfer jobs and even produced the artwork using vizio so that they looked nice but that's nowhere near the same thing. I've only recently started again on that sort of work once I realized that Osh is so cheap and can do a four layer board.
All bluetooth posturing aside- I think your idea is good and the best way to get traction is to get it built and working. A computer based interface and dev environment was your goal anyway, right? Forget bluetooth, get it built.
One thing I HAVE done, though, is solder BGAs. I have an oven at work. We'll talk.
Jamie