The problem, which you will face with any octave-up fuzz, not just the Superfuzz, is that everything is shifted up an octave, including the bass. And because it is a fuzz, that means that not only is the bass end shifted up an octave, but there is more treble content coming out than going in.
One feasible solution is to play with the tone-filtering. The stock circuit has a 2-position tone switch that selects between a heavily midscooped sound, and an unfiltered sound, with attenuation to match levels with the scoop sound.
The scoop filter has a 1000pf cap to pass the top end, and a 22k/100nf/10k network for the bass. The 22k/100nf pair rolls off content above around 72hz, at 6db/octave. I've seen some drawings where the 22k and 10 are reversed, yielding a rolloff starting at 159hz, which keeps more of the bass. Personally, I prefer that. You still get a scooped sound, but with more girth.
Another thing to play with is the top/bottom balance. Unlike the Big Muff and many other pedals that provide a control for essentially panning between the top and bottom filter paths, the SF is fixed. Consider inserting some resistance between that 1000pf cap and where it would normally join up with the content from the bass side. That could be a 50k panel-mount control or an internal trimmer, configured as a variable resistor (i.e., two solder terminals not 3) to attenuate how much treble is mixed in with the bass.